TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23452038|gb|AAN32904.1| methionine-S-sulfoxide reductase
MsrA1 [Chlamydomonas reinhardtii] 
         (160 letters)

Database: genome.fa 
           3590 sequences; 66,210,174 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQM02000013.1| Toxoplasma gondii GT1 gcontig_1107000984722, ...    59   4e-09
gb|AAQM02000407.1| Toxoplasma gondii GT1 gcontig_1107000919446, ...    28   4.1  
gb|AAQM02000061.1| Toxoplasma gondii GT1 gcontig_1107000986526, ...    28   4.1  
gb|AAQM02000030.1| Toxoplasma gondii GT1 gcontig_1107000917448, ...    28   4.1  
gb|AAQM02000092.1| Toxoplasma gondii GT1 gcontig_1107000970258, ...    27   9.1  
gb|AAQM02000021.1| Toxoplasma gondii GT1 gcontig_1107000956938, ...    27   9.1  
gb|AAQM02000019.1| Toxoplasma gondii GT1 gcontig_1107000921700, ...    27   9.1  
gb|AAQM02000001.1| Toxoplasma gondii GT1 gcontig_1107000958870, ...    27   9.1  

>gb|AAQM02000013.1| Toxoplasma gondii GT1 gcontig_1107000984722, whole genome shotgun
              sequence
          Length = 581845

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
 Frame = -1

Query: 19     GUFWHPEASFANVPG--VVKTRVGYTGGSRPNPTYESVCAGD-GHTEAMRVWFDPAIISY 75
              G FW  E  F    G  +  T VGY GG++ +PTY+ VC G+ GH E + + F    ++ 
Sbjct: 145672 GCFWGVEKLFRKEFGSQLRATTVGYAGGAKDHPTYKEVCTGNTGHYEVVEIQFFEDKVTL 145493

Query: 76     EDLLKQFFREHDPT 89
               DLL+ F+R HDPT
Sbjct: 145492 SDLLRFFWRIHDPT 145451



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = -2

Query: 95     QYKSAVWYHSEAHGTALAAVMKELEGKYRVRLATTV------DPAGDWWDAEEYHQKYIE 148
              QY SA++ +S  H      +  E++ ++  ++ T +      D    +W AE+YHQ Y+E
Sbjct: 145119 QYGSAIFVYSAEHRQTAEELRDEMQKQWAGQITTRILGGKLSDSCFKFWKAEDYHQVYLE 144940

Query: 149    KS 150
              ++
Sbjct: 144939 RN 144934


>gb|AAQM02000407.1| Toxoplasma gondii GT1 gcontig_1107000919446, whole genome shotgun
            sequence
          Length = 8362

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 38   RVGYTGGSRPNPTYESVCAGDGHTEA 63
            R+GY GG  P  +   VCA DG ++A
Sbjct: 5645 RLGYYGGDTPTHSVCQVCAEDGFSDA 5568


>gb|AAQM02000061.1| Toxoplasma gondii GT1 gcontig_1107000986526, whole genome shotgun
              sequence
          Length = 322225

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 89     TQKSKC-QYKSAVWYHSEAHGTALAAVMKELEGKYRVRLATTVDPA-GDWWDAEEYHQKY 146
              T+  KC ++    W  S  H +     ++ L G+ R +   + D   GD  + E++H  +
Sbjct: 250256 TEGVKCAEHNWKYWGPSWRHASITRLALQRLGGRQREQAPASSDKENGDRNEKEDFHSLH 250435

Query: 147    IEKSMMRRG 155
                K+M +RG
Sbjct: 250436 Y*KAMRKRG 250462


>gb|AAQM02000030.1| Toxoplasma gondii GT1 gcontig_1107000917448, whole genome shotgun
              sequence
          Length = 448584

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -3

Query: 135    DWWDA---EEYHQKYIEKSMMRRGSAGW 159
              +WWDA   E  HQ Y+     RR   GW
Sbjct: 344734 NWWDATVVELNHQSYVPHDRRRRRGKGW 344651


>gb|AAQM02000092.1| Toxoplasma gondii GT1 gcontig_1107000970258, whole genome shotgun
              sequence
          Length = 251361

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 14/127 (11%)
 Frame = -3

Query: 47     PNPTYESVCA-GDGHTEAMRVWFDPAIISYEDLLKQ--FFREHDPTQKSKCQYKSAVWYH 103
              P P +ES  A G G T A+ +  +   + +  L K+  F R  D             W  
Sbjct: 199534 PTPAFESPGATGGGKTAALIL*PEEEGVVF*QLRKRNDFARRKD-------------WRQ 199394

Query: 104    SEAHGTALAAVMKELEGKYRVRLATTVDPAG--------DWWDAEEYHQKYIEKSM---M 152
              S+ HGT     M+E +   +    +   P G        DW DA E       + +   +
Sbjct: 199393 SDPHGTLKMQEMQEKDDTAKTERGSAEGPTGTAEPHAESDWCDAIELWMNSKGRDVHKRI 199214

Query: 153    RRGSAGW 159
               R SA W
Sbjct: 199213 ERDSAAW 199193


>gb|AAQM02000021.1| Toxoplasma gondii GT1 gcontig_1107000956938, whole genome shotgun
             sequence
          Length = 497809

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 55    CAGDGHTEAMRVWFDPAIIS 74
             C G G+TEAM V FDP + S
Sbjct: 51658 C*GSGNTEAMGVAFDPPVSS 51599


>gb|AAQM02000019.1| Toxoplasma gondii GT1 gcontig_1107000921700, whole genome shotgun
              sequence
          Length = 520738

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 26     ASFANVPGVVKTRVGYTGGSRPNPTYESVCAGDGH 60
              A FA +PG+ K+R    GGS   PT  S CA   H
Sbjct: 311126 ALFARLPGIPKSRQAGRGGSSA-PTPLSPCAAAQH 311025


>gb|AAQM02000001.1| Toxoplasma gondii GT1 gcontig_1107000958870, whole genome shotgun
              sequence
          Length = 1360803

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 18/62 (29%)
 Frame = -1

Query: 111    LAAVMKELEGKYRVRLA------------------TTVDPAGDWWDAEEYHQKYIEKSMM 152
              L  VM E+E +Y  RLA                  TTV+ +G W  +++ +  Y E  +M
Sbjct: 377787 LETVMGEVEREYETRLAAARSRSRSRSSVRAGSGSTTVEASGPWASSDDTYGLYGETRLM 377608

Query: 153    RR 154
               R
Sbjct: 377607 ER 377602


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 66,210,174
  Number of sequences in database:  3590
  
Lambda     K      H
   0.317    0.131    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,234,911
Number of Sequences: 3590
Number of extensions: 204210
Number of successful extensions: 1107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 769
length of query: 160
length of database: 22,070,058
effective HSP length: 96
effective length of query: 64
effective length of database: 21,725,418
effective search space: 1390426752
effective search space used: 1390426752
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
